Publications:


33) Edrey Y. H., Casper D., Huchon D., Gelfond J. A., Mele J., Kristan D. M., Nevo E., & Buffenstein R. Sustained high levels of neuregulin-1 in the longest-lived rodents; a key determinant of rodent longevity. Aging Cell. Accepted

32) Erpenbeck D., Schmitz J., Churakov G., Huchon D., Woerheide G. & Degnan B. M. First evidence of miniature transposable elements in sponges (Porifera). Hydrobiologia, in press. [pdf]

31) Shneor O., Perlman G., Balaban A., Yom-Tov Y., Huchon D. & Geffen E. (2010) Origin of passerine migratory waves: evidence from the blackcap at a stopover site. Israel Journal of Ecology and Evolution. 26:2914-2915. [pdf]

30) Cohen O., Ashkenazy H., Belinky F., Huchon D. & Pupko T. (2010) GLOOME: Gain Loss Mapping Engine. Bioinformatics. 26:2914-2915. [pdf]

29) Szitenberg A., Rot C., Ilan M. & Huchon D. (2010) Diversity of sponge mitochondrial introns revealed by cox 1 sequences of Tetillidae. BMC Evolutionary Biology. 10:288. [pdf]

28) Diamant A., Goren M., Yokes M. B., Galil B. S., Klopman Y., Huchon D., Szitenberg A. & Karhan S.Ü. (2010) Dasyatispora levantinae gen. et sp. nov., a new microsporidian parasite from the common stingray Dasyatis pastinaca (Linnaeus, 1758) in the eastern Mediterranean. Diseases of Aquatic Organisms. 91: 137–150. [pdf]

27) Churakov G., Sadasivuni M.K., Rosenbloom K., Huchon D., Brosius J. & Schmitz J. (2010) Rodent evolution: back to the root. Molecular Biology and Evolution. 27:1315-1326. [pdf]

26) Belinky F., Cohen O. & Huchon D. (2010) Large-scale parsimony analysis of metazoan indels in protein-coding genes. Molecular Biology and Evolution. 27:441–451. [pdf]

25) Singh T. R., Tsagkogeorga G., Delsuc F., Blanquart S., Shenkar N., Loya Y. Douzery E. J. P. & Huchon D. (2009) Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny. BMC Genomics. 10: 534. [pdf]

24) Tsagkogeorga G., Turon X., Hopcroft R. R., Tilak M.-K., Feldstein T., Shenkar N., Loya Y., Huchon D., Douzery E. J. P. & Delsuc F. (2009) An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models. BMC Evolutionary Biology. 9: 187. [pdf]

23) Shemesh E., Huchon D., Simon-Blecher N. & Achituv Y. (2009) The distribution and molecular diversity of the Eastern Atlantic and Mediterranean chthamalids (Crustacea, Cirripedia). Zoologica Scripta. 38:365-378 [pdf]

22) Blanga-Kanfi S., Miranda H., Penn O., Pupko T., DeBry R.W. & Huchon D. (2009) Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. BMC Evolutionary Biology. 9:71. [pdf]

21) Levin E., Yom-Tov Y., Barnea A. & Huchon D. (2008) Genetic diversity and phylogeography of the greater mouse-tailed bat (Rhinopoma microphyllum) in the Levant. Acta chiropterologica. 10:207-212. [pdf]

20) Belinky F., Rot C., Ilan M. & Huchon D. (2008) The complete mitochondrial genome of the demosponge Negombata magnifica (Poescilosclerida). Molecular Phylogenetics and Evolution. 47:1238–1243. [pdf]

19) Singh T. R., Shneor O. & Huchon D. (2008) Bird mitochondrial gene order: insight from three warbler mitochondrial genomes. Molecular Biology and Evolution. 25:475–477. [pdf]

18) Steppan S. J., Ramirez O., Banbury J., Huchon, D., Pacheco V., Walker L. I. & Spotorno, A.E. (2007) A molecular reappraisal of the systematics of the leaf-eared mice Phyllotis and their relatives. Pp. 799-826. In Kelt, D. A., Lessa, E. P., Salazar-Bravo, J. and Patton, J. L. (eds). The quintessential naturalist: honoring the life and legacy of Oliver P. Pearson. University of California, Publications in Zoology 134:1-981. [pdf]

17) Simon-Blecher N., Huchon D. & Achituv Y. (2007) Phylogeny of coral-inhabiting barnacles (Cirripedia; Thoracica; Pyrgomatidae) based on 12S, 16S and 18S rDNA analysis. Molecular Phylogenetics and Evolution. 44: 1333-1341. [pdf]

16) Huchon D., Chevret P., Jordan U., Kilpatrick W. C., Ranwez V., Jenkins P. D., Brosius J. & Schmitz J. (2007) Multiple molecular evidences for a living mammalian fossil. Proceedings of the National Academy of Sciences USA. 104 : 7495–7499. [pdf]

15) Farwick A., Jordan U., Fuellen G., Huchon D., Catzeflis F., Brosius J. & Schmitz J. (2006) Automated scanning for phylogenetically informative transposed elements in rodents. Systematic Biology. 55 : 936-948. [pdf]

14) Davidov Y., Huchon D., Koval S. F. & Jurkevitch E. (2006) A new α-proteobacterial clade of Bdellovibrio-like predators: implications for the mitochondrial endosymbiotic theory. Environmental Microbiology. 8 : 2179-2188. [pdf]

13) Rot C., Goldfarb I., Ilan M. & Huchon D. (2006) Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria. BMC Evolutionary Biology. 6 : 71. [pdf]

12) Poux C., Chevret P., Huchon D., De Jong W. W. & Douzery E. J. P. (2006) Arrival and diversification of caviomorph rodents and plathyrrhine primates in South America. Systematic Biology. 55 : 228-244. [pdf]

11) Steindler L., Huchon D., Avni A. & Ilan M. (2005) 16S rRNA phylogeny of sponge-associated cyanobacteria. Applied and Environmental Microbiology. 71 : 4127-4131. [pdf]

10) Douzery E. J. P., & Huchon D. (2004) Rabbits, if anything, are likely glires. Molecular Phylogenetics and Evolution 33 : 922 - 935. [pdf]

9) Douzery E. J. P., Delsuc F., Stanhope M. J. & Huchon D. (2003) Local molecular clocks in three nuclear genes: divergence ages of rodents and other mammals, and incompatibility between fossil calibrations. Journal of Molecular Evolution 57 : S201 - S213. [pdf]

8) Huchon D., Nikaido M. & Okada N. (2002) Use of SINE retroposon in phylogeny. Médecine/Science 18 : 1276 - 1281. [pdf]

7) Pupko T., Huchon D., Cao Y., Norihiro Okada N. & Hasegawa M. (2002) Combining multiple data sets in a likelihood analysis: which models are the best? Molecular Biology and Evolution 19 : 2294 - 2307. [pdf]

6) Huchon D., Madsen O., Sibbald M. J. J. B., Ament K., Stanhope M. J., Catzeflis F., de Jong W. W. & Douzery E. J. P. (2002) Rodent Phylogeny and a Timescale for the Evolution of Glires: evidence from an Extensive Taxon Sampling using three Nuclear Genes. Molecular Biology and Evolution 19 : 1053-1065. [pdf]

5) Huchon D. & Douzery E. J. P. (2001) From the old-world to the new-world: a molecular chronicle of the phylogeny and biogeography of hystricognath rodents. Molecular Phylogenetics and Evolution 20 : 238-351. [pdf]

4) Robinson-Rechavi M. & Huchon D. (2000) RRTree: Relative-Rate Tests between groups of sequences on a phylogenetic tree. Bioinformatics 16 : 296-297. [pdf]

3) Huchon D., Catzeflis F. & Douzery E. J. P. (2000) Variance of molecular datings, evolution of rodents, and the phylogenetic affinities between Ctenodactylidae and Hystricognathi. The Proceedings of the Royal Society of London serie B 267 : 393-402. [pdf]

2) Huchon D., Delsuc F., Catzeflis F. M. & Douzery E. J. P. (1999) Armadillos exhibit less genetic polymorphism in North America than in South America: nuclear and mitochondrial data confirm the founder effect in Dasypus novemcinctus (Xenarthra). Molecular Ecology 8 : 1743-1748. [pdf]

1) Huchon D., Catzeflis F. M. & Douzery E. J. P. (1999) Molecular evolution of the nuclear von Willebrand factor gene in mammals and the phylogeny of rodents. Molecular Biology and Evolution 16 (5): 577-89. [pdf]



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