Tel Aviv University


Tel Aviv University
Physics Colloquium

Academic Year  2009 - 2010


The colloquium is held at Melamed Hall (Room 6) in the Shenkar Physics Building, every Sunday at 16:10. Light refreshments are served outside Melamed Hall at 15:50. 

 

November 22, 2009

"RNA Folding: A Physicist's Perspective"

Dr. Henri Orland
Director, Institut de Physique Theorique, CEA-Saclay
Fellow of the Mortimer and Raymond Sackler Institute of Advanced Studies


  After reviewing some elementary properties of RNA, we discuss how statistical mechanics can be used to determine the secondary structure of RNA. The idea is to first parametrize (as well as possible) the free energy of secondary structures. Given such a parametrization, we review the algorithms used for the prediction of secondary structures without pseudoknots. To include pseudoknots, we propose a classification of RNA structures in terms of their topological genii. This classification is based on matrix field-theories. We modify the free energy parametrization so as to include a penalty proportional to the genus of the RNA structure, and we show how with this new parametrization, one can efficiently predict RNA structures with pseudoknots.  

Host: Prof. David Andelman, x7239
 
Fall 2009 Schedule

For more information or for directions to Melamed Hall please contact:
Chava Balson  03-6408636

To suggest potential speakers or register feedback contact: Ron Lifshitz  03-6405145, Ehud Nakar  03-6405385, or Nissan Itzhaki  03-6406490.


Sponsored by:   The Raymond and Beverly Sackler School of Physics & Astronomy, The Faculty of Exact Sciences, Tel Aviv University.