Annelyse Thevenin

I am a postdoctoral fellow at the School of Computer Science at Tel Aviv University.
My postdoc advisor is Prof. Ron Shamir, and I am a member of the
Algorithms in Computational Genomics research group.

Before arriving in Tel Aviv, I finished my PhD at the
Laboratoire de Recherche en Informatique at University of Paris-South 11, France,
where my advisors were Prof. Alain Denise and Dr. Stephane Vialette.

Contact
Email: thevenin[at]tau[dot]ac[dot]il
Phone: 972-3-640-5404
Adress:
School of Computer Science
Schreiber, Room no. 223
Tel Aviv University
Tel Aviv 69978, Israel


Research Interests
    Computational Biology and Bioinformatics in general, with a particular focus on comparative genomics, and cancer.


Post-doc research
  • Title: Analysis of aberrations in cancer genomes
  • Advisor: Prof. Ron Shamir
  • Lab: ACGT (Algorithms in Computational Genomics in TAU)
  • Keywords: Comparative genomics, cancer.


Thesis research
  • Title: Algorithmic Aspects of Genome Rearrangements: Duplications and Partial Orders
  • Advisors: Prof. Alain Denise and Dr. Stephane Vialette
  • Lab: BioInfo
  • Keywords: Comparative genomics, (dis)similarity measures, duplicated gene, exemplar/intermediate/maximum matching, polynomial time approximation, partially ordered genome, pseudo-boolean programming, heuristic.
  • Manuscrit (in French)
  • Some results


Publication
  • 2009
    • Aspects Algorithmiques des Rearrangements Genomiques : Duplications et Ordres Partiels (Annelyse Thevenin), 2009.
    • Pseudo-boolean programming for partially ordered genomes (Sebastien Angibaud, Guillaume Fertin, Annelyse Thevenin, Stephane Vialette) In Comparative Genomics, 2009.
    • On the Approximability of Comparing Genomes with Duplicates (Sebastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thevenin, Stephane Vialette) In Journal of Graph Algorithms and Applications, volume 3, 2009.
  • 2008
    • Efficient tools for computing the number of breakpoints and the number of adjacencies between two genomes with duplicate genes (Sebastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thevenin, Stephane Vialette) In Journal of Computational Biology, volume 15, 2008.
    • Efficient tools for computing distances between two genomes with duplicate genes (Sebastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thevenin, Stephane Vialette) In Actes des Journes Ouvertes de Biologie Informatique et Mathematiques - JOBIM'08, 2008.
  • 2007
    • A Pseudo-Boolean programming approach for computing the breakpoint distance between two genomes with duplicate genes (Sebastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thevenin, Stephane Vialette) In Comparative Genomics, 2007.


Teaching

Last updated on November 29, 2010