107. Y. Pinto, I. Buchumenski, E.Y. Levanon and E. Eisenberg

Nucleic Acid Res. (2017, in press)

106. I.C. Vallecillo-Viejo, N. Liscovitch-Brauer, M.F. Montiel-Gonzalez, E. Eisenberg, J.J.C. Rosenthal

RNA Biology (2017, in press)

105. H.T. Porath, B.A. Knisbacher, E. Eisenberg, E.Y. Levanon

Massive A-to-I RNA editing is common across the Metazoa and correlates with dsRNA abundance

Genome Biol. 18, 185 (2017)

104. H.T. Porath, A. Schaffer, P. Kaniewska, S. Alon, E. Eisenberg, J. Rosenthal, E.Y. Levanon, O. Levy

A-to-I RNA editing in the earliest-diverging eumetazoan phyla

Mol. Biol. Evol. 34, 1890-1901 (2017)

103. N. Liscovitch-Brauer, S. Alon, H.T. Porath, B. Elstein, R. Unger, T. Ziv, A. Admon, E.Y. Levanon, J.J.C. Rosenthal and E. Eisenberg

Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods

Cell
**169**, 191–202 (2017)

Coverage: New-York Times, Washington Post, The Atlantic, The Conversation, Nature, Science, Nature Review Genetics, Phys.org, The Scientist, New Scientist, WIRED, PLoS, Popular Science, Scientific American, Science News, Davidson Institute (Hebrew),

102. N. Gal-Mark, L. Shallev, S. Sweetat, M. Barak, J.B. Li, E.Y. Levanon, E. Eisenberg and O. Behar

Sci Rep. **7**:43421 (2017).

101. Z. Ben-Moshe Livne, S. Alon, D. Vallone, Y. Bayleyen, A. Tovin, I. Shainer, L.G. Nisembaum, I. Aviram, S. Smadja-Storz, M. Fuentes, J. Falcón, E. Eisenberg, D.C. Klein, H.A. Burgess, N.S. Foulkes and Y. Gothilf

Genetically Blocking the Zebrafish Pineal Clock Affects Circadian Behavior

PLoS Genet. **12**, e1006445
(2016)

100. J. Jeffet, A. Kobo, T. Su, A. Grunwald, O. Green, A.N. Nilsson, E. Eisenberg, T. Ambjörnsson, F. Westerlund, E. Weinhold, D. Shabat, P.K. Purohit and Y. Ebenstein

Super-Resolution Genome Mapping in Silicon Nanochannels

ACS Nano **10**, 9823-9830 (2016)

99. K. Khermesh, A.M. D'Erchia, M. Barak, A. Annese, C. Wachtel, E.Y. Levanon, E. Picardi and E. Eisenberg

Reduced levels of protein recoding by A-to-I RNA editing in Alzheimer's disease

RNA **22**, 290-302 (2016)

98. E. Eisenberg

Proteome diversification by genomic parasites

Genome Biology **17**:17 (2016)

97. Paz-Yaacov, L. Bazak, H.T.Porath, I. Buchumenski, M. Danan-Gotthold, B.A. Knisbacher, E. Eisenberg and E.Y. Levanon

Elevated RNA Editing Activity is a Major Contributor to Transcriptomic Diversity in Tumors

Cell Reports **13**, 267-276 (2015)

96. M.R. Goldberg, L. Nachshon, M.Y. Appel, A. Elizur, M.B. Levy, E. Eisenberg, H.A. Sampson and Y. Katz

Efficacy of baked milk oral immunotherapy in baked milk-reactive allergic patients

Journal of Allergy and Clinical Immunology **136**,
1601-1606 (2015)

95. M. Danan-Gotthold, R. Golan-Gerstl, E. Eisenberg, K. Meir, R. Karni and E.Y. Levanon

Identification of recurrent regulated alternative splicing events across human solid tumors

Nucleic Acid Res. **43**, 5130-5144 (2015)

94. S. Alon, M. Erew and E. Eisenberg

Bioinformatics **31**, 2568-2570 (2015)

93. S. Alon and E. Eisenberg

Using Deep Sequencing Data for Identification of Editing Sites in Mature miRNAs

Methods in Molecular Biology, 1269, 231-242 (2015)

92. S. Alon, S.C. Garrett, E.Y. Levanon, S. Olson, B.R. Graveley, J.J.C. Rosenthal and E. Eisenberg

eLife **4**,
e05198 (2015)

91. S. Tomaselli, F. Galeano, S. Alon, S. Raho, S. Galardi, V.A. Polito, C. Presutti, S. Vincenti, E. Eisenberg, F. Locatelli and A. Gallo

Modulation of microRNA editing, expression and processing through ADAR2 deaminase in glioblastoma

Genome Biology **16**:5 (2015)

90. E.Y. Levanon and E. Eisenberg

Does RNA editing compensate for Alu invasion of the primate genome?

BioEssays **37**, 175-181
(2015)

89. L. Nachshon, M. R Goldberg, N. Schwartz, T. Sinai, R. Amitzur-Levy, A. Elizur, E. Eisenberg and Y. Katz

Decreased bone mineral density in young adult IgE-mediated cow's milkallergic patients

Journal of Allergy and Clinical Immunology **134**,
1108-1111 (2014)

88. E. Sagi and E. Eisenberg

Topological phase transition in a discrete quasicrystal

Phys. Rev. **E 90**, 012105 (2014)

87. L. Bazak, E.Y. Levanon and E. Eisenberg

Genome-wide analysis of Alu editability

Nucleic Acid Res. **42**, 6876-6884 (2014)

86. Z. Ben-Moshe, S. Alon, P. Mracek, L. Faigenbloom, A. Tovin, G. Vatine, E. Eisenberg, N. Foulkes, and Y. Gothilf

Nucleic Acid Res. **42**, 3750-3767 (2014)

85. L. Bazak, A. Haviv, M. Barak, J. Jacob-Hirsch, P. Deng, R. Zhang, F.J. Isaacs, G. Rechavi, J.B. Li, E. Eisenberg and E.Y. Levanon

Genome Research **24**, 365-376 (2014)

84. S. Alon and E. Eisenberg

Identifying RNA Editing Sites in miRNAs by Deep Sequencing

Methods in Molecular Biology, **1038**, 159-170 (2013)

83. E. Eisenberg and E.Y. Levanon

Human housekeeping genes, revisited

Trends in Genetics, **29**, 569-574 (2013)

(see Corrigendum, *ibid*
**30**, 119-120 (2014))

82. M. Goldberg, E. Eisenberg, A. Elizur, N. Rajuan, M. Rachmiel, A. Cohen, G. Zadik-Mnuhin, Y. Katz

Role of parental atopy in cow's milk allergy: a population-based study

Annals of Allergy, Asthma & Immunology, **110**,
279-283 (2013)

81. F. Vigneault, D. Ter-Ovanesyan, S. Alon, S. Eminaga, D.C. Christodoulou, J.G. Seidman, E. Eisenberg, G.M. Church

High-Throughput Multiplex Sequencing of miRNA

Current Protocols in Human Genetics, **11.12**, 1-10
(2012)

80. A. Tovin, S. Alon, Z. Ben-Moshe, P. Mracek, G. Vatine, N.S. Foulkes, J. Jacob-Hirsch, G. Rechavi, R. Toyama, S.L. Coon, D.C. Klein, E. Eisenberg and Y. Gothilf

PLoS Genetics, **8**, e1003116
(2012)

79. S. Alon, E. Mor, F. Vigneault, G. Church, F. Locatelli, F. Galeano, A. Gallo, N. Shomron and E. Eisenberg

Systematic identification of edited microRNAs in the human brain

Genome Research, **22**, 1533-1540 (2012)

78. H. Levit, Z. Rotman and E. Eisenberg

Jamming, relaxation, and crystallization of a supercooled fluid in a three-dimensional lattice

Phys. Rev., **E 85**, 011502 (2012)

77. E. Eisenberg

Bioinformatic Approaches for Identification of A-to-I Editing Sites

Curr. Top. Microbiol. Immunol.,
**353**, 145-162 (2012)

76. Z. Lindenfeld, E. Eisenberg and R. Lifshitz

Possibility of electron pairing in small metallic nanoparticles

Phys. Rev., **B 84**, 064532 (2011)

75. S. Alon, F. Vigneault, S. Eminaga, D.C. Christodoulou, J.G. Seidman, G.M. Church and E. Eisenberg

Barcoding bias in high-throughput multiplex sequencing of miRNA

Genome Research, **21** 1506-1511 (2011)

74. Y. Katz, N. Rajuan, M.R. Goldberg, E. Eisenberg, E. Heyman, A. Cohen and M. Leshno

Supplementation with cow's milk at birth is not recommended: Reply

Journal of Allergy and Clinical Immunology **127**,
839-840 (2011)

73. O. Levy, P. Kaniewska, S. Alon, E. Eisenberg, S. Karako-Lampert, L.K. Bay, R. Reef, M. Rodriguez-Lanetty, D.J. Miller, and O. Hoegh-Guldberg

Complex diel cycles of gene expression in the coral-algal symbiosis

Science, **331**, 175 (2011)

72. Z. Rotman and E. Eisenberg

Finite-temperature liquid-quasicrystal transition in a lattice model

Phys. Rev. **E83**, 011123 (2011)

71. Z. Rotman and E. Eisenberg

Phys. Rev. Lett., **105**,
225503 (2010)

70. S. Greenberger, E.Y. Levanon, N. Paz, A. Barzilai, M. Safran, S. Osenberg, N. Amariglio, G. Rechavi and E. Eisenberg

Tight-regulation of A-to-I editing in human coding sequences and non-conserved Alu repeats

BMC Genomics, **11**:608 (2010)

69. Y. Kleinberger and E. Eisenberg

BMC Genomics, **11**:453 (2010)

68. N. Paz-Yaacov, E.Y. Levanon, E. Nevo, Y. Kinar, A. Harmelin, J. Jacob-Hirsch, N. Amariglio, E. Eisenberg, and G. Rechavi

A-to-I RNA editing shapes transcriptome diversity

PNAS, **107**, 12174-12179 (2010)

67. Y. Katz, N. Rajuan, M.R. Goldberg, E. Eisenberg, E. Heyman, A. Cohen, M. Leshno

Early Exposure to Cow's Milk Protein is Protective against IgE-mediated Cow's Milk Protein Allergy

Journal of Allergy and Clinical Immunology **126**, 77-82
(2010)

66. E. Eisenberg, J.B. Li and E.Y. Levanon

Sequence based identification of RNA editing sites

RNA Biology **7**, 248-252 (2010)

65. Z. Rotman and E. Eisenberg

Ideal glass transition in a simple two-dimensional lattice model

Phys. Rev. **E80** 060104 (RC) (2009)

64. Z. Rotman and E. Eisenberg

Critical exponents from cluster coefficients

Phys. Rev. **E80** 031126 (2009)

63. M. Barak, E.Y. Levanon, E. Eisenberg, N. Paz, G. Rechavi, G.M. Church and R. Mehr

Evidence for Large Diversity in the Human Transcriptome Created by Alu RNA Editing

Nucleic Acid Res. **37**, 6905-6915 (2009)

62. S. Osenberg, D. Dominissini, G. Rechavi and E. Eisenberg

Widespread cleavage of A-to-I hyperediting substrates

RNA **15**: 1632-9 (2009)

61. S. Alon, E. Eisenberg, J. Jacob-Hirsch, G. Rechavi, G. Vatine, R. Toyama, I.B. Dawid, S.L. Coon, D.C. Klein and Y. Gothilf

A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland

Bioinformatics **25**:559-562 (2009)

60. S. Carmi, E.Y. Levanon and E. Eisenberg

Efficiency of complex production in changing environment

BMC Systems Biology **3**:3 (2009)

59. N. Paz, E.Y. Levanon, N. Amariglio, A.B. Heimberger, Z. Ram, S. Constantini, M. Krupsky, I. Ben-Dov, C. Brodie, E. Eisenberg and G. Rechavi

RNA editing as an epigenetic mechanism contributing to the
tumor phenotype

FEBS Journal 276, 382-382 (2009)

58. N. Paz, E.Y. Levanon, N. Amariglio, A.B. Heimberger, Z. Ram, S. Constantini, Z.S. Barabash, K. Adamsky, M. Safran, A. Hirschberg, M. Krupsky, I. Ben-Dov, S. Cazacu, T. Mikkelsen, C. Brodie, E. Eisenberg and G. Rechavi

Altered adenosine-to-inosine RNA
editing in human cancer

Neuro-Oncology 10, 508-508 (2008)

57. E. Eisenberg and E.Y. Levanon

A-to-I Editing of *Alu*
Repeats

in "*RNA and DNA editing:
molecular mechanisms and their integration into biological systems*",
edited by H.C. Smith, Wiley (2008); pp.257-279.

56. Y. Haberman, N. Amariglio, G. Rechavi and E.
Eisenberg

Trinucleotide
repeats are prevalent among cancer-related genes

Trends in Genetics, **24**, 14-18 (2008)

55. D. Dubrovin and E. Eisenberg

Super-Poissonian shot noise as a measure of dephasing in closed quantum dots

Phys. Rev. **B 76**, 195330 (2007)

54. G. Lev-Maor, R. Sorek, E.Y. Levanon, N. Paz, E.
Eisenberg and G. Ast

RNA-editing
mediated birth of a primate specific exon

Genome Biology **8**:R29 (2007)

53.

Estimation of
critical exponents from the cluster coefficients: Application to hard spheres

PNAS **104**, 5755-8 (2007)

52. N. Paz, E.Y. Levanon, N. Amariglio,
A.B. Heimberger, Z. Ram, S. Constantini,
Z.S. Barabash, K. Adamsky,
M. Safran, A. Hirschberg, M. Krupsky,
I. Ben-Dov, S. Cazacu, T. Mikkelsen, C. Brodie, E.
Eisenberg and G. Rechavi

Altered
adenosine-to-inosine RNA editing in human cancer

Genome Research **17**, 1586-95 (2007)

51. E. Eisenberg and A. Baram

Analysis of the ordering transition of hard disks
through the Mayer cluster expansion

Phys. Rev. **E 73**, 025104 (RC) (2006)

50. Y. Neeman, E.Y. Levanon,
M.F. Jantsch and E. Eisenberg

RNA editing
level in the mouse is determined by the genomic repeat repertoire

RNA **12**, 1802 (2006) [Supplementary information]

49. E.Y. Levanon and E. Eisenberg

Algorithmic approaches for
identification of RNA editing sites

Briefings in Funct. Genom. Proteom. **5**,
43 (2006)

48. M. Eshkol, E. Eisenberg, M. Karpovski and
A. Palevski,

Dephasing Time in a
Two-Dimensional Electron Fermi Liquid

Phys. Rev. **B 73**, 115318 (2006)

47. S. Carmi, E.Y. Levanon, S. Havlin
and E. Eisenberg,

Connectivity and expression in protein networks:
Proteins in a complex are uniformly expressed

Phys. Rev. **E 73**, 031909 (2006)

46. E. Eisenberg and A. Baram

A first-order phase-transition and a super-cooled fluid
in a 2D lattice gas model

Europhys. Lett. **71**, 900-5 (2005)

45. K. Levanon,

Letter from the editor: A-to-I RNA editing in Alu repeats in the human genome

EMBO Reports **6**, 831-5 (2005)

44. E. Eisenberg, K. Adamsky, L. Cohen, N. Amariglio, A. Hirshberg, G. Rechavi and E.Y. Levanon

Identification
of RNA editing sites in the SNP database

Nucleic Acid Res. **33**, 4612-4617 (2005)

43. Y. Neeman, D. Dahary,
E.Y. Levanon, R. Sorek and
E. Eisenberg

Is there any sense in antisense editing?

Trends in Genetics **21**, 544-7 (2005) [Supplementary
material]

reprinted from *Trends in Genetics*, with permission from Elsevier.

42. M. Havilio, E.Y. Levanon,
G. Lerman, M. Kupiec, and
E. Eisenberg

Evidence
for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome

BMC Genomics **6**, 93 (2005)

41. E.Y. Levanon, M. Hallegger,
Y. Kinar, R. Shemesh, K. Djinovic-Carugo, G. Rechavi, M.F.
Jantsch, and E. Eisenberg

Evolutionarily conserved human targets of adenosine to inosine RNA editing

Nucleic Acid Res. **33**, 1162-8 (2005)

40. E. Eisenberg, S. Nemzer, Y. Kinar,
R. Sorek, G. Rechavi and
E.Y. Levanon

Is abundant A-to-I RNA editing primate-specific?

Trends in Genetics **21**, 77-81 (2005) [Supplementary
material]

reprinted from *Trends in Genetics*, with permission from Elsevier.

39. E.Y. Levanon*, E. Eisenberg*, R. Yelin*, S. Nemzer*, M. Hallegger, R. Shemesh, Z.Y. Fligelman, A. Shoshan, S.R.
Pollock, D. Sztybel, M. Olshansky,
G. Rechavi and M.F. Jantsch

Systematic identification of abundant A-to-I editing
sites in the human transcriptome

Nature Biotech. **22**, 1001-5 (2004) [Supplementary
data] [A-to-I
editing sites fasta file]

* These authors have equally contributed to this work,
as stated in the paper.

38. E. Eisenberg and E.Y. Levanon

Preferential Attachment in the protein network evolution

Phys. Rev. Lett. **91**, 138701
(2003)

37.

Human Housekeeping genes are compact

Trends in Genetics **19**, 362-5 (2003) [Supplementary
material: list of human housekeeping genes]

reprinted from *Trends in Genetics*, with permission from Elsevier.

36. K. Held, E. Eisenberg and B.L. Altshuler

Random matrix theory for closed quantum dots with weak
spin-orbit coupling

Phys. Rev. Lett. **90**,
106802 (2003)

35. E. Eisenberg and A. Baram

The persistence length of two dimensional self avoiding
random walks

Jour. Phys. **A 36**, L121-5 (2003)

34. K. Held, E. Eisenberg and B.L. Altshuler

Phase relaxation of one-partical
states in closed quantum dots

Chaos Solitons and Fractals, **16**, 417-429
(2003)

33. E. Eisenberg and E.H. Lieb

Polarization of interacting bosons with spin

Phys. Rev. Lett. **89**, 220403
(2002)

32. K. Held, E. Eisenberg and B.L. Altshuler

Spectral fluctuations effects on conductance peak height
statistics in quantum dots

Phys. Rev. **B 66**, 033308 (2002)

31. L.P. Rokhinson, L.J. Guo,
S.Y. Chou, D.C. Tsui,

Coherent electron transport in a Si quantum dot dimer

Phys. Rev. Lett. **88**, 186801
(2002)

30. E. Eisenberg, K. Held and B.L. Altshuler

Dephasing
times in closed quantum dots

Phys. Rev. Lett. **88**, 136801
(2002)

29. E. Eisenberg, R. Berkovits, D.A. Huse and B.L. Altshuler

Breakdown of Nagaoka phase in
the two-dimensional t - J model

Phys. Rev. **B 65**, 134437 (2002)

28. E. Eisenberg and A. Baram

Random Closest Packing is a 2D Lattice Model

J. Phys. **A 33**, 1729-34 (2000)

27.

Ground-State Spin Structure of Strongly Interacting
Disordered 1D Hubbard Model

J. Phys. **A 32**, 3599-602 (1999)

26. E. Eisenberg and R. Berkovits

Disorder Induced Spin Polarization in Restricted
Geometries

Phys. Rev. **B 60**, 15261-5 (1999)

25. E. Eisenberg and R. Berkovits

Disorder Induced Ferromagnetism

Ann. Phys. **8**, 707-10 (1999)

24. E. Eisenberg and R. Berkovits

Addition spectrum of a classical short range interaction
model for a disordered quantum dot

J. Phys. Cond. Mat. **10**, 6515-22 (1998)

23. E. Eisenberg and A. Baram

Diffusional Relaxation in Random Sequential Deposition
in 2D

Europhysics Lett. **44**, 168-72 (1998)

22. Y. Strauss, L.P. Horwitz and

Representation of quantum mechanical resonances in the
Lax-Phillips Hilbert Space

Jour. Math. Phys. **41**, 8050-71 (2000)

21. E. Eisenberg and A. Baram

Diffusional Relaxation in Random Sequential Deposition

J. Phys. **A 30**, L271-6 (1997)

20. E. Eisenberg and L.P. Horwitz

Time, irreversibility and unstable systems in quantum
and classical physics

Adv. Chem. Phys. **99**, 245-97 (1997)

19. E. Eisenberg and Y. Ashkenazy

A New Time-Scale for Tunneling

Found. Phys. **27**, 191-202 (1997)[reprint (PDF)]

18. E. Eisenberg, R. Avigur and

Quantization process for the driven well - Where P Fails to Commute with P2

Found. Phys. **27**, 135-51 (1997)[reprint (PDF)]

17. E. Eisenberg and I. Dana

Limited Sensitivity to Analyticity: A Manifestation of Quantum Chaos

Found. Phys. **27**, 153-70 (1997)[reprint (PDF)]

16.

Toeplitz matrices within DVR formulation: application
to reactive collinear scattering problems

Jour. Chem. Phys. **104**, 1886-92 (1996)[reprint (PDF)]

15. E. Eisenberg, R. Avigur and

Traces of a quantum anti-resonance in a driven system

Phys. Rev. **E 53**, 389-92 (1996)[reprint (PDF)]

14. I. Dana, E. Eisenberg and

Anti-resonance and localization in quantum systems

Phys. Rev. **E 54**, 5948-63 (1996)[reprint (PDF)]

13. E. Eisenberg and L.P. Horwitz

Intrinsic mechanism for entropy change in classical and quantum evolution

Phys. Rev. **A 52**, 70-5 (1995)[reprint (PDF)]

12. E. Eisenberg, A. Baram and M. Baer

Calculation of the density of states using DVR and Toeplitz
matrices

Jour. Phys. **A**: Math. and Gen., **28** L433-8
(1995)[reprint (PDF)]

11. D.M. Charutz, S. Ron, E. Eisenberg and M. Baer

Application of Toeplitz matrices to scattering
processes: a NIP-Toeplitz approach to treating
chemical reactions

Chem. Phys. Lett. **244**, 299-304 (1995)[reprint (PDF)]

10. I. Dana, E. Eisenberg and N. Shnerb

Dynamical localization near quantum anti-resonance: exact results and a
solvable case

Phys. Rev. Letters. **74**, 686-9 (1995)[reprint (PDF)]

9.

Toeplitz matrices within DVR formulation: application
to quantum scattering problems

Jour. Chem. Phys. **101**, 3802-5 (1994)[reprint (PDF)]

8. S. Ron, E. Eisenberg, M. Gilibert and M. Baer

Applications of square-integrable basis functions for
scattering problems

Phys. Rev. **A 49**, 4549-55 (1994)[reprint (PDF)]

7. M. Amit, Y. Shmerler, E.
Eisenberg, M. Abraham and N. Shnerb

Language and codification dependence of long-range correlations in texts

Fractals **2** 7-15 (1994)

6. N. Shnerb and E. Eisenberg

Analyzing long-range correlations in finite sequences

Phys. Rev. **E 49** (RC) 1005-8 (1994)[reprint (PDF)]

5. S. Tasaki,

Measurement theory in Lax-Phillips formalism

Found. Phys. **24**, 1179-94 (1994)[reprint (PDF)]

4. E. Eisenberg and

Suppression of chaos, quantum resonance, and statistics of a nonintegrable system

Phys. Rev. **E 49** (RC) 941-4 (1994)[reprint (PDF)]

3. E. Eisenberg, S. Havlin and G.H. Weiss

Fluctuations of the probability density of diffusing particles for different
realizations of a random medium

Phys. Rev. Lett. **72**, 2827-30 (1994)[reprint (PDF)]

2. S. Havlin, A. Bunde, E.
Eisenberg, J. Lee, H.E. Roman, S. Schwarzer and H.E.
Stanley

Multifractal fluctuations in
the dynamics of disordered systems

Physica **A 194**, 288-97 (1993)

1. E. Eisenberg, A. Bunde, S. Havlin
and H.E. Roman

The range of multifractality for random walks on
random fractals

Phys. Rev. **E 47**, 2333-5 (1993) [reprint (PDF)]