List of Publications of E. Eisenberg

 

88. E. Sagi and E. Eisenberg

Topological phase transition in a discrete quasicrystal

Phys. Rev. E 90, 012105 (2014)

 

87. L. Bazak, E.Y. Levanon and E. Eisenberg

Genome-wide analysis of Alu editability

Nucleic Acid Res. 42, 6876-6884 (2014)

 

86. Z. Ben-Moshe, S. Alon, P. Mracek, L. Faigenbloom, A. Tovin, G. Vatine, E. Eisenberg, N. Foulkes, and Y. Gothilf

The Light-Induced Transcriptome of the Zebrafish Pineal Gland Reveals Complex Regulation of the Circadian Clockwork by Light

Nucleic Acid Res. 42, 3750-3767 (2014)

 

85. L. Bazak, A. Haviv, M. Barak, J. Jacob-Hirsch, P. Deng, R. Zhang, F.J. Isaacs, G. Rechavi, J.B. Li, E. Eisenberg and E.Y. Levanon

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

Genome Research 24, 365-376 (2014)

 

84. S. Alon and E. Eisenberg

Identifying RNA Editing Sites in miRNAs by Deep Sequencing

Methods in Molecular Biology, 1038, 159-170 (2013)

 

83. E. Eisenberg and E.Y. Levanon

Human housekeeping genes, revisited

Trends in Genetics, 29, 569-574 (2013)

(see Corrigendum, ibid 30, 119-120 (2014))

 

82. M. Goldberg, E. Eisenberg, A. Elizur, N. Rajuan, M. Rachmiel, A. Cohen, G. Zadik-Mnuhin, Y. Katz

Role of parental atopy in cow's milk allergy: a population-based study

Annals of Allergy, Asthma & Immunology, 110, 279-283 (2013)

 

81. F. Vigneault, D. Ter-Ovanesyan, S. Alon, S. Eminaga, D.C. Christodoulou, J.G. Seidman, E. Eisenberg, G.M. Church

High-Throughput Multiplex Sequencing of miRNA

Current Protocols in Human Genetics, 11.12, 1-10 (2012)

 

80. A. Tovin, S. Alon, Z. Ben-Moshe, P. Mracek, G. Vatine, N.S. Foulkes, J. Jacob-Hirsch, G. Rechavi, R. Toyama, S.L. Coon, D.C. Klein, E. Eisenberg and Y. Gothilf

Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork

PLoS Genetics, 8, e1003116 (2012)

 

79. S. Alon, E. Mor, F. Vigneault, G. Church, F. Locatelli, F. Galeano, A. Gallo, N. Shomron and E. Eisenberg

Systematic identification of edited microRNAs in the human brain

Genome Research, 22, 1533-1540 (2012)

 

78. H. Levit, Z. Rotman and E. Eisenberg

Jamming, relaxation, and crystallization of a supercooled fluid in a three-dimensional lattice

Phys. Rev., E 85, 011502 (2012)

 

77. E. Eisenberg

Bioinformatic Approaches for Identification of A-to-I Editing Sites

Curr. Top. Microbiol. Immunol., 353, 145-162 (2012)

 

76. Z. Lindenfeld, E. Eisenberg and R. Lifshitz

Possibility of electron pairing in small metallic nanoparticles

Phys. Rev., B 84, 064532 (2011)

 

75. S. Alon, F. Vigneault, S. Eminaga, D.C. Christodoulou, J.G. Seidman, G.M. Church and E. Eisenberg

Barcoding bias in high-throughput multiplex sequencing of miRNA

Genome Research, 21 1506-1511 (2011)

 

74. Y. Katz, N. Rajuan, M.R. Goldberg, E. Eisenberg, E. Heyman, A. Cohen and M. Leshno

Supplementation with cow's milk at birth is not recommended: Reply

Journal of Allergy and Clinical Immunology 127, 839-840 (2011)

 

73. O. Levy, P. Kaniewska, S. Alon, E. Eisenberg, S. Karako-Lampert, L.K. Bay, R. Reef, M. Rodriguez-Lanetty, D.J. Miller, and O. Hoegh-Guldberg

Complex diel cycles of gene expression in the coral-algal symbiosis

Science, 331, 175 (2011)

 

72. Z. Rotman and E. Eisenberg

Finite-temperature liquid-quasicrystal transition in a lattice model

Phys. Rev. E83, 011123 (2011)

 

71. Z. Rotman and E. Eisenberg

Direct Measurements of the Dynamical Correlation Length Indicate its Divergence at an Athermal Glass Transition

Phys. Rev. Lett., 105, 225503 (2010)

 

70. S. Greenberger, E.Y. Levanon, N. Paz, A. Barzilai, M. Safran, S. Osenberg, N. Amariglio, G. Rechavi and E. Eisenberg

Tight-regulation of A-to-I editing in human coding sequences and non-conserved Alu repeats

BMC Genomics, 11:608 (2010)

 

69. Y. Kleinberger and E. Eisenberg

Large-scale analysis of structural, sequence and thermodynamic characteristics of A-to-I RNA editing sites in human Alu repeats

BMC Genomics, 11:453 (2010)

 

68. N. Paz-Yaacov, E.Y. Levanon, E. Nevo, Y. Kinar, A. Harmelin, J. Jacob-Hirsch, N. Amariglio, E. Eisenberg, and G. Rechavi

A-to-I RNA editing shapes transcriptome diversity

PNAS, 107, 12174-12179 (2010)

 

67. Y. Katz, N. Rajuan, M.R. Goldberg, E. Eisenberg, E. Heyman, A. Cohen, M. Leshno

Early Exposure to Cow's Milk Protein is Protective against IgE-mediated Cow's Milk Protein Allergy

Journal of Allergy and Clinical Immunology 126, 77-82 (2010)

 

66. E. Eisenberg, J.B. Li and E.Y. Levanon

Sequence based identification of RNA editing sites

RNA Biology 7, 248-252 (2010)

 

65. Z. Rotman and E. Eisenberg

Ideal glass transition in a simple two-dimensional lattice model

Phys. Rev. E80 060104 (RC) (2009)

 

64. Z. Rotman and E. Eisenberg

Critical exponents from cluster coefficients

Phys. Rev. E80 031126 (2009)

 

63. M. Barak, E.Y. Levanon, E. Eisenberg, N. Paz, G. Rechavi, G.M. Church and R. Mehr

Evidence for Large Diversity in the Human Transcriptome Created by Alu RNA Editing

Nucleic Acid Res. 37, 6905-6915 (2009)

 

62. S. Osenberg, D. Dominissini, G. Rechavi and E. Eisenberg

Widespread cleavage of A-to-I hyperediting substrates

RNA 15: 1632-9 (2009)

 

61. S. Alon, E. Eisenberg, J. Jacob-Hirsch, G. Rechavi, G. Vatine, R. Toyama, I.B. Dawid, S.L. Coon, D.C. Klein and Y. Gothilf

A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland

Bioinformatics 25:559-562 (2009)

 

60. S. Carmi, E.Y. Levanon and E. Eisenberg

Efficiency of complex production in changing environment

BMC Systems Biology 3:3 (2009)

59. N. Paz, E.Y. Levanon, N. Amariglio, A.B. Heimberger, Z. Ram, S. Constantini, M. Krupsky, I. Ben-Dov, C. Brodie, E. Eisenberg and G. Rechavi

RNA editing as an epigenetic mechanism contributing to the tumor phenotype
FEBS Journal 276, 382-382 (2009)

 

58. N. Paz, E.Y. Levanon, N. Amariglio, A.B. Heimberger, Z. Ram, S. Constantini, Z.S. Barabash, K. Adamsky, M. Safran, A. Hirschberg, M. Krupsky, I. Ben-Dov, S. Cazacu, T. Mikkelsen, C. Brodie, E. Eisenberg and G. Rechavi

Altered adenosine-to-inosine RNA editing in human cancer
Neuro-Oncology 10, 508-508 (2008)

 

57. E. Eisenberg and E.Y. Levanon

A-to-I Editing of Alu Repeats

in "RNA and DNA editing: molecular mechanisms and their integration into biological systems", edited by H.C. Smith, Wiley (2008); pp.257-279.

 

56. Y. Haberman, N. Amariglio, G. Rechavi and E. Eisenberg
Trinucleotide repeats are prevalent among cancer-related genes
Trends in Genetics, 24, 14-18 (2008)

55. D. Dubrovin and E. Eisenberg

Super-Poissonian shot noise as a measure of dephasing in closed quantum dots

Phys. Rev. B 76, 195330 (2007)

54. G. Lev-Maor, R. Sorek, E.Y. Levanon, N. Paz, E. Eisenberg and G. Ast
RNA-editing mediated birth of a primate specific exon
Genome Biology 8:R29 (2007)

53. E. Eisenberg and A. Baram
Estimation of critical exponents from the cluster coefficients: Application to hard spheres
PNAS 104, 5755-8 (2007)

52. N. Paz, E.Y. Levanon, N. Amariglio, A.B. Heimberger, Z. Ram, S. Constantini, Z.S. Barabash, K. Adamsky, M. Safran, A. Hirschberg, M. Krupsky, I. Ben-Dov, S. Cazacu, T. Mikkelsen, C. Brodie, E. Eisenberg and G. Rechavi
Altered adenosine-to-inosine RNA editing in human cancer
Genome Research 17, 1586-95 (2007)

51. E. Eisenberg and A. Baram
Analysis of the ordering transition of hard disks through the Mayer cluster expansion
Phys. Rev. E 73, 025104 (RC) (2006)

50. Y. Neeman, E.Y. Levanon, M.F. Jantsch and E. Eisenberg
RNA editing level in the mouse is determined by the genomic repeat repertoire
RNA 12, 1802 (2006) [Supplementary information]

49. E.Y. Levanon and E. Eisenberg
Algorithmic approaches for identification of RNA editing sites
Briefings in Funct. Genom. Proteom. 5, 43 (2006)

48. M. Eshkol, E. Eisenberg, M. Karpovski and A. Palevski,
Dephasing Time in a Two-Dimensional Electron Fermi Liquid
Phys. Rev. B 73, 115318 (2006)

47. S. Carmi, E.Y. Levanon, S. Havlin and E. Eisenberg,
Connectivity and expression in protein networks: Proteins in a complex are uniformly expressed
Phys. Rev. E 73, 031909 (2006)

46. E. Eisenberg and A. Baram
A first-order phase-transition and a super-cooled fluid in a 2D lattice gas model
Europhys. Lett. 71, 900-5 (2005)

45. K. Levanon, E. Eisenberg, G. Rechavi and E.Y. Levanon
Letter from the editor: A-to-I RNA editing in Alu repeats in the human genome
EMBO Reports 6, 831-5 (2005)

44. E. Eisenberg, K. Adamsky, L. Cohen, N. Amariglio, A. Hirshberg, G. Rechavi and E.Y. Levanon
Identification of RNA editing sites in the SNP database
Nucleic Acid Res. 33, 4612-4617 (2005)

43. Y. Neeman, D. Dahary, E.Y. Levanon, R. Sorek and E. Eisenberg
Is there any sense in antisense editing?
Trends in Genetics 21, 544-7 (2005) [Supplementary material]
reprinted from Trends in Genetics, with permission from Elsevier.

42. M. Havilio, E.Y. Levanon, G. Lerman, M. Kupiec, and E. Eisenberg
Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome
BMC Genomics 6, 93 (2005)

41. E.Y. Levanon, M. Hallegger, Y. Kinar, R. Shemesh, K. Djinovic-Carugo, G. Rechavi, M.F. Jantsch, and E. Eisenberg
Evolutionarily conserved human targets of adenosine to inosine RNA editing
Nucleic Acid Res. 33, 1162-8 (2005)

40. E. Eisenberg, S. Nemzer, Y. Kinar, R. Sorek, G. Rechavi and E.Y. Levanon
Is abundant A-to-I RNA editing primate-specific?
Trends in Genetics 21, 77-81 (2005) [Supplementary material]
reprinted from Trends in Genetics, with permission from Elsevier.

39. E.Y. Levanon*, E. Eisenberg*, R. Yelin*, S. Nemzer*, M. Hallegger, R. Shemesh, Z.Y. Fligelman, A. Shoshan, S.R. Pollock, D. Sztybel, M. Olshansky, G. Rechavi and M.F. Jantsch
Systematic identification of abundant A-to-I editing sites in the human transcriptome
Nature Biotech. 22, 1001-5 (2004) [Supplementary data] [A-to-I editing sites fasta file]
* These authors have equally contributed to this work, as stated in the paper.

38. E. Eisenberg and E.Y. Levanon
Preferential Attachment in the protein network evolution
Phys. Rev. Lett. 91, 138701 (2003)

37. E. Eisenberg and E. Levanon
Human Housekeeping genes are compact
Trends in Genetics 19, 362-5 (2003) [Supplementary material: list of human housekeeping genes]
reprinted from Trends in Genetics, with permission from Elsevier.

36. K. Held, E. Eisenberg and B.L. Altshuler
Random matrix theory for closed quantum dots with weak spin-orbit coupling
Phys. Rev. Lett. 90, 106802 (2003)

35. E. Eisenberg and A. Baram
The persistence length of two dimensional self avoiding random walks
Jour. Phys. A 36, L121-5 (2003)

34. K. Held, E. Eisenberg and B.L. Altshuler
Phase relaxation of one-partical states in closed quantum dots
Chaos Solitons and Fractals, 16, 417-429 (2003)

33. E. Eisenberg and E.H. Lieb
Polarization of interacting bosons with spin
Phys. Rev. Lett. 89, 220403 (2002)

32. K. Held, E. Eisenberg and B.L. Altshuler
Spectral fluctuations effects on conductance peak height statistics in quantum dots
Phys. Rev. B 66, 033308 (2002)

31. L.P. Rokhinson, L.J. Guo, S.Y. Chou, D.C. Tsui, E. Eisenberg, R. Berkovits and B.L. Altshuler
Coherent electron transport in a Si quantum dot dimer
Phys. Rev. Lett. 88, 186801 (2002)

30. E. Eisenberg, K. Held and B.L. Altshuler
Dephasing times in closed quantum dots
Phys. Rev. Lett. 88, 136801 (2002)

29. E. Eisenberg, R. Berkovits, D.A. Huse and B.L. Altshuler
Breakdown of Nagaoka phase in the two-dimensional t - J model
Phys. Rev. B 65, 134437 (2002)

28. E. Eisenberg and A. Baram
Random Closest Packing is a 2D Lattice Model
J. Phys. A 33, 1729-34 (2000)

27. E. Eisenberg and R. Berkovits
Ground-State Spin Structure of Strongly Interacting Disordered 1D Hubbard Model
J. Phys. A 32, 3599-602 (1999)

26. E. Eisenberg and R. Berkovits
Disorder Induced Spin Polarization in Restricted Geometries
Phys. Rev. B 60, 15261-5 (1999)

25. E. Eisenberg and R. Berkovits
Disorder Induced Ferromagnetism
Ann. Phys. 8, 707-10 (1999)

24. E. Eisenberg and R. Berkovits
Addition spectrum of a classical short range interaction model for a disordered quantum dot
J. Phys. Cond. Mat. 10, 6515-22 (1998)

23. E. Eisenberg and A. Baram
Diffusional Relaxation in Random Sequential Deposition in 2D
Europhysics Lett. 44, 168-72 (1998)

22. Y. Strauss, L.P. Horwitz and E. Eisenberg
Representation of quantum mechanical resonances in the Lax-Phillips Hilbert Space
Jour. Math. Phys. 41, 8050-71 (2000)

21. E. Eisenberg and A. Baram
Diffusional Relaxation in Random Sequential Deposition
J. Phys. A 30, L271-6 (1997)

20. E. Eisenberg and L.P. Horwitz
Time, irreversibility and unstable systems in quantum and classical physics
Adv. Chem. Phys. 99, 245-97 (1997)

19. E. Eisenberg and Y. Ashkenazy
A New Time-Scale for Tunneling
Found. Phys. 27, 191-202 (1997)[reprint (PDF)]

18. E. Eisenberg, R. Avigur and N. Shnerb
Quantization process for the driven well - Where P Fails to Commute with P2
Found. Phys. 27, 135-51 (1997)[reprint (PDF)]

17. E. Eisenberg and I. Dana
Limited Sensitivity to Analyticity: A Manifestation of Quantum Chaos
Found. Phys. 27, 153-70 (1997)[reprint (PDF)]

16. E. Eisenberg, D.M. Charutz, S. Ron and M. Baer
Toeplitz matrices within DVR formulation: application to reactive collinear scattering problems
Jour. Chem. Phys. 104, 1886-92 (1996)[reprint (PDF)]

15. E. Eisenberg, R. Avigur and N. Shnerb
Traces of a quantum anti-resonance in a driven system
Phys. Rev. E 53, 389-92 (1996)[reprint (PDF)]

14. I. Dana, E. Eisenberg and N. Shnerb
Anti-resonance and localization in quantum systems
Phys. Rev. E 54, 5948-63 (1996)[reprint (PDF)]

13. E. Eisenberg and L.P. Horwitz
Intrinsic mechanism for entropy change in classical and quantum evolution
Phys. Rev. A 52, 70-5 (1995)[reprint (PDF)]

12. E. Eisenberg, A. Baram and M. Baer
Calculation of the density of states using DVR and Toeplitz matrices
Jour. Phys. A: Math. and Gen., 28 L433-8 (1995)[reprint (PDF)]

11. D.M. Charutz, S. Ron, E. Eisenberg and M. Baer
Application of Toeplitz matrices to scattering processes: a NIP-Toeplitz approach to treating chemical reactions
Chem. Phys. Lett. 244, 299-304 (1995)[reprint (PDF)]

10. I. Dana, E. Eisenberg and N. Shnerb
Dynamical localization near quantum anti-resonance: exact results and a solvable case
Phys. Rev. Letters. 74, 686-9 (1995)[reprint (PDF)]

9. E. Eisenberg, S. Ron and M. Baer
Toeplitz matrices within DVR formulation: application to quantum scattering problems
Jour. Chem. Phys. 101, 3802-5 (1994)[reprint (PDF)]

8. S. Ron, E. Eisenberg, M. Gilibert and M. Baer
Applications of square-integrable basis functions for scattering problems
Phys. Rev. A 49, 4549-55 (1994)[reprint (PDF)]

7. M. Amit, Y. Shmerler, E. Eisenberg, M. Abraham and N. Shnerb
Language and codification dependence of long-range correlations in texts
Fractals 2 7-15 (1994)

6. N. Shnerb and E. Eisenberg
Analyzing long-range correlations in finite sequences
Phys. Rev. E 49 (RC) 1005-8 (1994)[reprint (PDF)]

5. S. Tasaki, E. Eisenberg and L.P. Horwitz
Measurement theory in Lax-Phillips formalism
Found. Phys. 24, 1179-94 (1994)[reprint (PDF)]

4. E. Eisenberg and N. Shnerb
Suppression of chaos, quantum resonance, and statistics of a nonintegrable system
Phys. Rev. E 49 (RC) 941-4 (1994)[reprint (PDF)]

3. E. Eisenberg, S. Havlin and G.H. Weiss
Fluctuations of the probability density of diffusing particles for different realizations of a random medium
Phys. Rev. Lett. 72, 2827-30 (1994)[reprint (PDF)]

2. S. Havlin, A. Bunde, E. Eisenberg, J. Lee, H.E. Roman, S. Schwarzer and H.E. Stanley
Multifractal fluctuations in the dynamics of disordered systems
Physica A 194, 288-97 (1993)

1. E. Eisenberg, A. Bunde, S. Havlin and H.E. Roman
The range of multifractality for random walks on random fractals
Phys. Rev. E 47, 2333-5 (1993) [reprint (PDF)]


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